Well I'm not entirely 100% into metalurgy at this point in time, (i do day dream of actually becoming a blacksmith some day), but I would think that the holes, that have plugs, were for casting differences. They look like they align for the lifters, so I'm not sure what may be different. Maybe for deburring later ? who knows.
We may not be able to see the insides, I would assume something is quite different on the inside, usually new is better.
Looks like some weight savings possibly on the intake differences (one looked like it was webbed more).
One thing I can't see from here, is if either heads have provisions for EGR. I know that the EGR takes up space on the heads, and it does cause cooling problems for that cylinder. Something to be aware of I don't know if any there is any heads without EGR provisions.